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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015908215.1_cds_XP_016458337.1_51974
CDS Infomation

[gene=LOC107782016] [db_xref=GeneID:107782016] [protein=probable polygalacturonase At1g80170] [frame=3] [partial=5'] [protein_id=XP_016458337.1] [location=complement(join(68680..68961,69109..69225,69631..69739,69833..69914,70281..70488,70693..70713,70812..70982,71085..>71233))] [gbkey=CDS]
Sequence

TTTATATATTTTCAGTCTTTTCATGATGTCTGGAAAATCGCATGTTCTTCACCATTACGA
CCAAAAATAGTAATCCCAAGTGGATATTCTTTTCTAGTTCGACCAATTGATTTTGTTGGG
CCTTGCCGGTCAAAGGTGTCTCTATCAATTGCAGGTTCAATTGTTGCACCGAAAGATCCT
CAAGTCTGGGATGGTTTGAATCCACATAAATGGCTTTATTTCTTTAAAGTGAAATACCTG
ACTGTAGAAGGAGGAGGAACAGTTAACGGGATGGGCCAGAAATGGTGGTCTAGTTCATGC
AAAATTAATACAACCAATCCCTGTCGACATGCTCCAACAGCTATGACTTTCCACAAATGC
AACAATCTGAAAGTGAGGGACATAAGGATGTTAAATAGTCAACAAATGCATATATCAATT
TCTAAATGTATACATGTTGAAGTATCACATCTCATAGTACAAGCACCAGCTAAGAGCCCT
AACACAGATGGAATTCACATAAGCTCATCTATACATGTTGGTATCAGAGATAGCAGTATT
GGCACAGGAGATGACTGTATATCTATAGTGGGCAATTCTTCAAGAATCTTGGTCAAAAAC
ATTGCTTGTGGACCAGGCCATGGTATAAGCATTGGAAGCTTGGGAAAGTCAAACTCATGG
TCTCAAGTGCACGATGTCAGTGTTGATGGAGCATATCTTTCCAACACAGAAAATGGTGTT
AGGATAAAGACTTGGCAGGGAGGTAGTGGGTTTGTCAGAAAGATTGCTTTTGCGAATTTG
TGGATGGAAAATGTGTCAAATCCCATTATAATAGATCAATATTATTGTGATTCTCGACAG
GCCTGCCCAAACCAGACTTTGGCTATTAGCATTAACAGTGTATCCTTTGTGGGTATTAGA
GGATCTTCAGCAACAAAAAATGCAATAACATTTGCCTGCAGTGATAGCTCCCCCTGTAGA
AATCTATATTTGGAAGATATCCAACTTGTTTCATTTTTGGAGTTTCCCACAACATCGTTT
TGCTGGAATGCATATGGCTCAACCTCAGGATTAAACAATCCCTCATCTTGTTTTCCCTCT
GGTGAAACCATTATTCAGCTTCCCACAGAATTATCCAACTTGAGCAAGTCCATTTGA

Peptide Sequence

PEP ID

XP_016458337.1
PEP Infomation

PREDICTED: probable polygalacturonase At1g80170, partial [Nicotiana tabacum]
Sequence

FIYFQSFHDVWKIACSSPLRPKIVIPSGYSFLVRPIDFVGPCRSKVSLSIAGSIVAPKDP
QVWDGLNPHKWLYFFKVKYLTVEGGGTVNGMGQKWWSSSCKINTTNPCRHAPTAMTFHKC
NNLKVRDIRMLNSQQMHISISKCIHVEVSHLIVQAPAKSPNTDGIHISSSIHVGIRDSSI
GTGDDCISIVGNSSRILVKNIACGPGHGISIGSLGKSNSWSQVHDVSVDGAYLSNTENGV
RIKTWQGGSGFVRKIAFANLWMENVSNPIIIDQYYCDSRQACPNQTLAISINSVSFVGIR
GSSATKNAITFACSDSSPCRNLYLEDIQLVSFLEFPTTSFCWNAYGSTSGLNNPSSCFPS
GETIIQLPTELSNLSKSI

Transcript Sequence

Gene sequence data has not been registered.